Alignment of alleles: Atlantic cod (Gadus morhua) IGIV1S17

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 Q   V   T   V   T   Q   T   P   V       V   S   F   T   P   G   S   T   V   T
  AJ225243,IGIV1S17*01          CAG GTG ACT GTG ACT CAG ACA CCA GTA ... GTG TCC TTT ACT CCA GGA TCC ACA GTC ACT

  AJ225256,IGIV1S17*02          --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---

                                                         __________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   T   C   K   I   N   P   A   V   Y   R   D   S   D   G   D   N       M   F
  AJ225243,IGIV1S17*01          CTG ACC TGT AAA ATA AAC CCA GCG GTT TAC AGA GAC AGT GAT GGA GAT AAT ... ATG TTC

  AJ225256,IGIV1S17*02          --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... --- ---

                                                                                             ______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   Q   Q   K   P   G   E   A   P   K   L   F   I   K   Y   T   T
  AJ225243,IGIV1S17*01          TGG TAC CAA CAG AAA CCT GGA GAA GCC CCC AAG CTC TTC ATA AAA TAT ACA ACC ... ...

  AJ225256,IGIV1S17*02          --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ...

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     Q   L   V   S   P   T   P       A   R   F   S   G   S   G
  AJ225243,IGIV1S17*01          ... ... ... ... ... CAA CTT GTA TCA CCA ACA CCA ... GCT CGG TTT AGT GGC AGT GGA

  AJ225256,IGIV1S17*02          ... ... ... ... ... --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                         S   S   T   D   F   S   L   T   I   N   G   P   Q   R   E   D   A   A
  AJ225243,IGIV1S17*01          ... ... AGC AGC ACT GAC TTC TCT CTG ACC ATC AAC GGG CCC CAG CGT GAA GAT GCA GCA
                                                                                     A  
  AJ225256,IGIV1S17*02          ... ... --- --- --- --- --- --- --- --- --- --- --C G-- --- --- --- --- --- ---

                                                ________________CDR3-IMGT__________________
                                101 102 103 104 105 106 107 108 109 110 111 112 113 114 115
                                 V   Y   H   C   Q   S   Y   H   Y   L   N   S   V   D   V
  AJ225243,IGIV1S17*01          GTT TAT CAC TGT CAG AGC TAC CAC TAC CTA AAC AGT GTC GAT GTG  #c
                                                             L
  AJ225256,IGIV1S17*02          --- --- --- --- --- --- --- -T- --- --- --- --- --- --- ---  #c
#c: rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 21/03/2002
Last updated: Friday, 22-Sep-2023 18:24:46 CEST
Author: Nathalie Bosc